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Kim, Namshin(Professor)

INFO

  • AffiliationKRIBB School
  • Majors Bioscience
    (Bioinformatics)
  • Contact Information042-879-8162
  • Major물리화학
  • DegreePh.D.
  • Highest Level of Education서울대학교
  • E-Mail
Personal Homepage

Field of Research

Bioinformatics, Genome Informatics, Next Generation Sequencing, Genomics Convergence

Research Results

-  Yun-Gyeong Lee, Namhee Jeong, Ji Hong Kim, Kwanghee Lee, Kil Hyun Kim, Ali Pirani, Bo-Keun Ha, Sung-Taeg Kang, Beom-Seok Park, Jung-Kyung Moon#, Namshin Kim#, and Soon-Chun Jeong#. “Development, validation and genetic analysis of a large soybean SNP genotyping array”. The Plant Journal, 81 625?636 (2015). # Joint co-corresponding authors -  Mi-Ae Jang, Sang-Heon Lee, Namshin Kim#, and Chang-Seok Ki#. “Frequency and Spectrum of Actionable Pathogenic Secondary Findings in 196 Korean Exomes”. Genetics in Medicine 17(12): 1007-1011 (2015). # Joint co-corresponding authors -  Hee Jeong Yoo, Kyung Kim, In Hyang Kim, Seong-Hwan Rho, Jong-Eun Park, KiYoung Lee, Soon Ae Kim, Byung Yoon Choi and Namshin Kim#. “Whole Exome Sequencing for a Patient with Rubinstein-Taybi Syndrome Reveals de novo Variants besides an Overt CREBBP Mutation”. International Journal of Molecular Sciences, 16 5697-5713 (2015). # Corresponding author

Treatise

-  Population Structure and Domestication Revealed by High-Depth Resequencing of Korean Cultivated and Wild Soybean Genomes[DNA Research,2014-04-02] -  Dynamics of Long-term HSPC Subtypes In Non-human Primates Revealed by A Decade-Long Clonal-Tracking Study[Cell Stem Cell,2014-04-03] -  Transcription-related element gene expression pattern differs between microglia and macrophages during inflammation[Inflammation Research,2014-05-01] -  Whole-Exome Sequencing Identifies a Novel Genotype-Phenotype Correlation in the Entactin Domain of the Known Deafness Gene TECTA[PLoS ONE,2014-05-09] -  Energy Metabolism in Mycobacterium gilvum PYR-GCK: Insights from Transcript Expression Analyses Following Two States of Induction[PLoS ONE,2014-06-13] -  Whole-Genome Analyses of Korean Native and Holstein Cattle Breeds by Massively Parallel Sequencing[PLoS ONE,2014-07-03] -  Comparative analysis of the radish genome based on a conserved ortholog set (COS) of Brassic[Theoretical and Applied Genetics,2014-09-01] -  Toxic Pyrene Metabolism in Mycobacterium gilvum PYR-GCK Results in the Expression of Mammalian Cell Entry Genes as Revealed by Transcriptomics Study[Journal of Microbiology and Biotechnology,2014-09-01] -  Deep Sequencing Reveals Low Incidence of Endogenous LINE-1 Retrotransposition in Human Induced Pluripotent Stem Cells[PLoS ONE,2014-10-07] -  De novo assembly and characterization of the complete chloroplast genome of radish (Raphanus sativus L.)[Gene,2014-11-01] -  Orthopaedic manifestations and treatment outcome of two siblings with Escobar syndrome and homozygous mutations in the CHRNG gene[Journal of Pediatric Orthopaedics B,2014-12-31] -  Global Transcriptome Profiling of Genes that Are Differentially Regulated During Differentiation of Mouse Embryonic Neural Stem Cells into Astrocytes[Journal of Molecular Neuroscience,2014-12-31] -  The complete mitochondrial genome of cultivated radish WK10039 (Raphanus sativus L.)[Mitochondrial DNA,2014-12-31] -  Global Transcriptome Profiling of Genes that Are Differentially Regulated During Differentiation of Mouse Embryonic Neural Stem Cells into Astrocytes[ JOURNAL OF MOLECULAR NEUROSCIENCE,2015-01-01] -  Construction of a reference genetic map of Raphanus sativus based on genotyping by whole-genome resequencing[ THEORETICAL AND APPLIED GENETICS,2015-02-01] -  Development, validation and genetic analysis of a large soybean SNP genotyping array[ PLANT JOURNAL,2015-02-01] -  A genome-wide scan for signatures of directional selection in domesticated pigs[ BMC GENOMICS,2015-02-25] -  Whole Exome Sequencing for a Patient with Rubinstein-Taybi Syndrome Reveals de novo Variants besides an Overt CREBBP Mutation[ INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES,2015-03-11] -  Exploring the Genetic Signature of Body Size in Yucatan Miniature Pig[ PLOS ONE,2015-04-17] -  Orthopaedic manifestations and treatment outcome of two siblings with Escobar syndrome and homozygous mutations in the CHRNG gene[ JOURNAL OF PEDIATRIC ORTHOPAEDICS-PART B,2015-05-01] -  Effect of Next-Generation Exome Sequencing Depth for Discovery of Diagnostic Variants[Genomics & Informatics,2015-06-30] -  Whole-genome resequencing analyses of five pig breeds, including Korean wild and native, and three European origin breeds[ DNA RESEARCH,2015-08-01] -  Deep Sequencing of the Medicago truncatula Root Transcriptome Reveals a Massive and Early Interaction between Nodulation Factor and Ethylene Signals[ PLANT PHYSIOLOGY,2015-09-01] -  Adverse prognostic effect of homozygous TET2 mutation on the relapse risk of acute myeloid leukemia in patients of normal karyotype[ HAEMATOLOGICA,2015-09-01] -  Prognostic and functional importance of the engraftment-associated genes in the patient-derived xenograft models of triple-negative breast cancers[ BREAST CANCER RESEARCH AND TREATMENT,2015-11-01] -  Transcriptomic Features of Bovine Blastocysts Derived by Somatic Cell Nuclear Transfer[ G3-GENES GENOMES GENETICS,2015-12-01] -  Frequency and Spectrum of Actionable Pathogenic Secondary Findings in 196 Korean Exomes[ GENETICS IN MEDICINE,2015-12-01] -  The Clinical Significance and Molecular Features of the Spatial Tumor Shapes in Breast Cancers[ PLOS ONE,2015-12-15] -  The complete mitochondrial genome of cultivated radish WK10039 (Raphanus sativus L.)[ MITOCHONDRIAL DNA PART A,2016-02-01] -  Identification of haplotypes at the Rsv4 genomic region in soybean associated with durable resistance to soybean mosaic virus[ THEORETICAL AND APPLIED GENETICS,2016-03-01] -  Response to Biesecker[ GENETICS IN MEDICINE,2016-04-01] -  CLEC4C p.K210del variant causes impaired cell surface transport in plasmacytoid dendritic cells of amyotrophic lateral sclerosis[ ONCOTARGET,2016-05-03] -  Elucidating the triplicated ancestral genome structure of radish based on chromosome?level comparison with the Brassica genomes[ THEORETICAL AND APPLIED GENETICS,2016-07-01] -  Copy number variations in Hanwoo and Yanbian cattle genomes using the massively parallel sequencing data[ GENE,2016-09-01] -  Identification of candidate domestication regions in the radish genome based on high-depth resequencing analysis of 17 genotypes[ THEORETICAL AND APPLIED GENETICS,2016-09-01] -  Bidirectional Retroviral Integration Site PCR Methodology and Quantitative Data Analysis Workflow[ JOVE-JOURNAL OF VISUALIZED EXPERIMENTS,2017-06-18] -  GenoCore: A simple and fast algorithm for core subset selection from large genotype datasets[ PLOS ONE,2017-07-20] -  SEXCMD: Development and validation of sex marker sequences for whole-exome/genome and RNA sequencing[ PLOS ONE,2017-09-08]

Patent

-  인트로[2017-10-12]